EGAF00005411397 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411397
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	297199
Sequences flagged as poor quality	0
Sequence length	61
%GC	35

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6532	2.1978539631694587	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAA	732	0.24629961742805326	No Hit
GTATCAACGCAGAGTACGGGCACGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAA	606	0.20390378164125722	No Hit
GTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	527	0.17732226555271047	No Hit
GGTTATACCTGCTTGCACGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	455	0.1530960736745413	No Hit
GTATCAACGCAGAGTACGGGGACCATGCCGGCCAGAACCTGTTGGATCAACAACCCCAATC	390	0.1312252060067497	No Hit
GTATCAACGCAGAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA	362	0.12180390916523946	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTTGG	15	0.0057801083	54.998314	50
GTCCTGG	30	3.4579203E-5	45.893707	1
GCTATCA	25	7.796325E-4	44.057964	1
TATCAAG	25	7.8352285E-4	44.01347	2
ATCTATT	25	7.848231E-4	43.998657	45
ACTGTTG	25	7.848231E-4	43.998657	28
GCTTAAA	125	0.0	43.99865	20
CTGCTAC	40	3.9308215E-6	41.248737	18
GTGGTAT	2175	0.0	38.487415	1
TGGTATC	2210	0.0	37.964104	2
TTAAACG	145	0.0	37.929874	22
TACCACT	235	0.0	37.445663	13
CTTAAAC	140	0.0	37.320286	21
GCTACGC	45	8.823979E-6	36.665546	20
CCCAGAC	30	0.0019236186	36.665543	7
AAGCGCG	30	0.0019236186	36.665543	37
GCTTCAT	30	0.0019236186	36.665543	11
CGGGAAT	70	4.0636223E-9	35.35606	17
GAAGCGC	40	1.8985051E-4	34.373947	36
ACCACTG	265	0.0	34.244236	14