EGAF00005411459 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411459
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	143568
Sequences flagged as poor quality	0
Sequence length	61
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7802	5.434358631449905	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAA	578	0.40259667892566586	No Hit
GATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAA	221	0.15393402429510755	No Hit
ATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	214	0.14905828596901818	No Hit
AGATGGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAA	209	0.14557561573609717	No Hit
GGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAAAAAAA	193	0.13443107099075002	No Hit
GTATCAACGCAGAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA	151	0.10517664103421374	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGCTTA	55	0.0	54.997913	18
TCAACGA	35	2.4758265E-8	54.99791	4
CGGGTCA	15	0.005774211	54.99791	16
CGAGAGT	15	0.005774211	54.99791	10
CAAACCA	15	0.005774211	54.99791	9
GGACGCA	15	0.005774211	54.99791	19
TGCTTAA	60	0.0	50.414753	19
GCTTAAA	50	1.4915713E-10	49.49812	20
ACTGCTT	65	0.0	46.536694	17
GTCGCGT	30	3.476643E-5	45.831593	20
TCGCGTC	30	3.476643E-5	45.831593	21
CGCGTCA	30	3.476643E-5	45.831593	22
CGGGACG	25	7.834918E-4	43.99833	17
CGAAGAG	40	3.9167917E-6	41.248432	8
TTAAACG	60	8.913048E-10	41.248432	22
CACTGCT	90	0.0	39.72071	16
GCGTCAG	35	8.631789E-5	39.28422	23
CAACGAA	50	4.0922714E-7	38.49854	5
CTTAAAC	65	1.9535946E-9	38.075478	21
GAGTAGA	30	0.0019203799	36.665276	12