EGAF00005411489 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411489
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66359
Sequences flagged as poor quality	0
Sequence length	61
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9002	13.565605268313266	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAA	241	0.3631760575053874	No Hit
ATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	86	0.12959809520939133	No Hit
GATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAA	85	0.12809114061393329	No Hit
GGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAAAAAAA	84	0.12658418601847526	No Hit
AGATGGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAA	81	0.12206332223210115	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAGTAA	15	0.0057600215	54.999245	14
AACGCAA	15	0.0057600215	54.999245	6
GGATCCT	15	0.0057600215	54.999245	30
TCAATTA	15	0.0057600215	54.999245	13
TGGATCC	15	0.0057600215	54.999245	29
ACCCAAT	15	0.0057600215	54.999245	49
CACTAAT	15	0.0057600215	54.999245	15
CAAACCT	15	0.0057600215	54.999245	34
GTGGTAT	235	0.0	42.158848	1
TGGTATC	240	0.0	41.249435	2
TCGACTT	95	0.0	37.63106	2
CAGTGGT	40	1.8741723E-4	34.40045	1
AGTGGTA	40	1.8825084E-4	34.37453	2
GTCGACT	105	0.0	34.07283	1
CGACTTT	105	0.0	34.047153	3
ACGGGGA	65	8.193274E-8	33.845688	16
TACGGGG	115	0.0	31.086533	15
GACTTTT	115	0.0	31.086533	4
GTATCAA	830	0.0	28.515074	1
GAGCGCC	40	0.0077924347	27.520363	1