FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005411503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005411503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1806475
Sequences flagged as poor quality0
Sequence length61
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG129790.7184710555086564No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGAT501.820556E-533.00003446
GTGGTAT16850.032.8250851
TGGTATC16850.031.8302442
GTATCAA81100.031.453471
ATACGTC350.004100228731.42860647
AAGACCG350.00410078431.4277325
TATCCGA350.00410078431.4277324
ACGTCGT400.00787426927.50002749
TATCAAC91950.027.4298152
AGAGTAC44800.025.90332611
ATCAACG99600.025.1255263
CAGAGTA47200.024.7027310
CAACGCA101800.024.419785
TCAACGC102700.024.1790054
AACGCAG108300.023.3858016
TACGGGT3600.022.91605615
GTGATCG752.8740574E-421.99941314
AGTACGG51650.021.93552413
GGTATCA37450.021.8964711
GAGTACG53150.021.31645812
Produced by FastQC (version 0.11.5)