EGAF00005411509 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411509
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	160468
Sequences flagged as poor quality	0
Sequence length	61
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7003	4.364109978313433	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAA	490	0.3053568312685395	No Hit
GTATCAACGCAGAGTACGGGGACCATGCCGGCCAGAACCTGTTGGATCAACAACCCCAATC	448	0.279183388588379	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCCGTACTCTGCGTTGATA	284	0.17698232669441882	No Hit
GTATCAACGCAGAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA	247	0.15392477004761074	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	240	0.14956252960091732	No Hit
GTATCAACGCAGAGTACGGGACCATGCCGGCCAGAACCTGTTGGATCAACAACCCCAATCC	219	0.13647580826083705	No Hit
GATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAA	173	0.10780965675399455	No Hit
GTATCAACGCAGAGTACGGGCACGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAA	170	0.10594012513398311	No Hit
GGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAAAAAAA	167	0.10407059351397163	No Hit
ATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	167	0.10407059351397163	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCGTACTCTGCGTTGATAC	165	0.10282423910063065	No Hit
GTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	164	0.10220106189396017	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTCAGT	15	0.005769398	55.01247	38
GTTGAAG	15	0.0057765204	54.995327	52
GCGAAAC	15	0.0057765204	54.995327	23
CATGAAA	15	0.0057765204	54.995327	10
CGGGGTC	15	0.0057765204	54.995327	17
TACGCGG	15	0.0057765204	54.995327	15
TATCTTC	15	0.0057765204	54.995327	3
TCATGAA	15	0.0057765204	54.995327	9
TGTGTAA	20	2.6079314E-4	54.995327	54
AGTACGC	15	0.0057765204	54.995327	13
GTACGCG	15	0.0057765204	54.995327	14
TAACGCA	25	7.839502E-4	43.996258	23
CGGGATG	45	1.7925777E-7	42.774143	17
CCCAGAG	35	8.638733E-5	39.282375	8
CCAGAGT	35	8.638733E-5	39.282375	9
ACCCAGA	35	8.638733E-5	39.282375	7
GAGGGTG	80	9.094947E-12	37.809288	11
CTTAACG	30	0.0019214968	36.66355	21
TTAACGC	30	0.0019214968	36.66355	22
ATAAACG	45	8.801961E-6	36.66355	3