EGAF00005411545 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411545
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	905560
Sequences flagged as poor quality	0
Sequence length	61
%GC	36

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	15847	1.7499668713282388	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1605	0.177238393921993	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGA	1365	0.1507354565130969	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAAC	1232	0.1360484120323336	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAA	1230	0.13582755422059278	No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTT	1080	0.1192632183400327	No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGATGCCTTATGTGA	952	0.10512831838862141	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTGTA	15	0.005783722	54.998787	9
TCGCGAG	15	0.005783722	54.998787	24
CTTAACG	35	2.4952897E-8	54.998783	21
CCACGCG	20	2.6136174E-4	54.998783	33
CTGCTTA	305	0.0	45.080967	18
GTGGTAT	3390	0.0	44.490143	1
TGGTATC	3380	0.0	44.436817	2
TGCTTAA	310	0.0	44.35386	19
GCTTAAC	45	1.8040919E-7	42.776833	20
GCTACGC	65	4.1836756E-11	42.306755	20
TACTTCG	40	3.9395472E-6	41.24909	5
TGCTACG	70	9.458745E-11	39.284847	19
TAACGCA	50	4.1239582E-7	38.499146	23
ACTGCTT	365	0.0	38.42381	17
TACCACT	465	0.0	37.25724	13
GGTAACA	30	0.0019177985	36.69625	1
TATCACG	30	0.0019224862	36.67801	2
AGAGTCC	30	0.0019256164	36.66586	11
TGTAGCG	30	0.0019256164	36.66586	5
ACCACTG	470	0.0	34.520515	14