EGAF00005411554 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411554
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	800610
Sequences flagged as poor quality	0
Sequence length	91
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT	5856	0.7314422752651104	No Hit
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1401	0.17499156892869186	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	1249	0.1560060453903898	No Hit
GTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1190	0.14863666454328572	No Hit
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTT	997	0.12453004584004697	TruSeq Adapter, Index 11 (95% over 21bp)
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	988	0.1234059029989633	No Hit
GTGGTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTT	850	0.10616904610234695	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGTATC	750	0.0	53.83923	2
GACGTTA	25	0.0077939443	51.0024	7
CGACTTT	395	0.0	48.423023	3
GTGGTAT	910	0.0	44.845676	1
GTATCAA	3670	0.0	44.131596	1
GGTATCA	1735	0.0	38.222214	1
ACGTGCA	45	0.001662361	37.779552	7
TATCAAC	4475	0.0	36.948177	2
TCGACTT	535	0.0	36.54606	2
CAACGCA	5260	0.0	31.918892	5
ACCGTCT	95	2.0726093E-6	31.317263	8
ATCAACG	5445	0.0	30.990538	3
GTCGACT	645	0.0	30.976254	1
TCAACGC	5650	0.0	29.790873	4
AACGCAG	5725	0.0	29.402435	6
CAAGACG	75	5.900292E-4	28.336435	4
TAAGACG	765	0.0	28.336435	4
GACGCAC	60	0.0068028057	28.334665	7
CTTAGTC	60	0.0068028057	28.334665	9
GACTTTT	680	0.0	28.12808	4