EGAF00005411556 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411556
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	396318
Sequences flagged as poor quality	0
Sequence length	91
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT	3409	0.8601678450133479	No Hit
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	752	0.18974661761514744	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	574	0.14483318950943436	No Hit
GTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	571	0.1440762216200122	No Hit
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTT	544	0.13726351061521302	TruSeq Adapter, Index 11 (95% over 21bp)
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	437	0.11026498922582371	No Hit
GTGGTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTT	414	0.10446156874025403	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGATA	35	4.820454E-4	48.576912	8
CGACTTT	190	0.0	46.973053	3
TGGTATC	450	0.0	45.33273	2
GTGGTAT	460	0.0	43.43429	1
GTATCAA	1665	0.0	43.14845	1
GTCCTAC	45	0.0016597816	37.786808	1
ACGATAC	45	0.001660811	37.78204	9
ATCGCCA	45	0.001660811	37.78204	8
TACAAGC	45	0.0016618408	37.77727	2
TATCAAC	2110	0.0	35.651184	2
CGAGTAA	30	1.5952086E-4	35.416195	30-31
TAGCACA	60	1.5937713E-4	35.416195	4
CTACACT	110	4.789399E-9	34.772263	4
AAGCGCG	25	0.0027886494	33.999546	64-65
TACATCG	50	0.0027869754	33.999546	5
GGTATCA	845	0.0	33.2032	1
CTCGGTG	90	1.3572735E-6	33.055115	2
GTAGTCA	65	2.5486632E-4	32.695995	9
CAACGCA	2370	0.0	32.09873	5
GTCGACT	285	0.0	31.323275	1