FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005411587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005411587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1942127
Sequences flagged as poor quality0
Sequence length61
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG213601.0998250886785468No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGTAA358.669884E-539.2857546
GTGGTAT22300.039.0058061
TGGTATC22250.038.8200232
GTATCAA95050.028.6991181
AGAGTAC56200.026.4710811
TGGCGTA550.001226852825.00002545
CAGAGTA60350.024.92417510
TATCAAC110400.024.6922532
GGTATCA43700.023.683911
AGTACGG61300.023.28185713
GAGTACG62800.023.1636412
ACACGTG600.00203663122.9155086
TATCGCT600.00203663122.9155087
ACGGGCG1254.6300556E-821.99888816
CTACGGG752.8746296E-421.99888614
TACGGGG29300.021.86749615
ATCAACG124150.021.839413
ACGGGGA14200.021.68904716
CAACGCA123150.021.6594835
TCAACGC124300.021.525464
Produced by FastQC (version 0.11.5)