FastQCFastQC Report
Wed 8 May 2024
EGAF00005411601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005411601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2015289
Total Bases122.9 Mbp
Sequences flagged as poor quality0
Sequence length61
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG204021.0123610062874357No Hit
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37310.18513473749918746No Hit
GTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31590.15675171154112388No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT25960.12881527165582704No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)