EGAF00005411679 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411679
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1230755
Sequences flagged as poor quality	0
Sequence length	61
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17699	1.4380603775731158	No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGA	3026	0.24586534281802633	No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGG	1755	0.14259539875929816	No Hit
CTGTAGTCCTTTCTCTCAATTTTCTTTTAAATACATTTTTTACTCCATGAAGAAGCTTCAT	1710	0.1389391064834187	No Hit
GTTTAAGTCACCTTCATTTTAATCTAAAAGCATTGCCCTTCTATTGGTATTAATTCGGGGC	1462	0.11878887349634981	No Hit
CTTCTATCTTCTCCAAATTGTTTCATCCTACCACTCCCAATTAATCTTTCCATTTTCGTCT	1290	0.10481371190854394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCTACG	40	3.940626E-6	41.249207	19
CTCCGAA	35	8.671137E-5	39.283363	38
TGGTATC	2905	0.0	37.500084	2
GTCCGAT	30	0.001925858	36.665962	11
GTGGTAT	2995	0.0	36.577717	1
GCGGTAT	65	8.3271516E-8	33.87716	1
ACTCCGA	50	1.8208446E-5	32.998024	37
TCCGATG	35	0.004100132	31.427969	12
GACGTCA	35	0.004100132	31.427969	21
TGTCCGA	35	0.004100132	31.427969	10
GTATCAA	12685	0.0	30.747494	1
GTCAACG	45	3.7961287E-4	30.55497	3
CGAATGC	45	3.7970327E-4	30.553726	41
CTCGTAG	40	0.007838246	27.525194	1
GTACACG	60	6.278847E-5	27.52519	1
TACAACG	40	0.007860046	27.50953	2
CTGTCCG	50	7.032994E-4	27.499472	9
CTATCGG	40	0.007874086	27.499472	12
ACACCGA	50	7.032994E-4	27.499472	22
TCGATAG	40	0.007874086	27.499472	20