FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005411693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005411693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences804764
Sequences flagged as poor quality0
Sequence length61
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29070.36122391160638395No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGGCT150.005783371654.9990717
TACGGCA257.855729E-443.99925215
TCCATCG257.860539E-443.99378627
ATCGCTC300.001925440736.66604630
TGCTACG501.8195316E-532.9994419
GCTACGC501.8195316E-532.9994420
GTATCAA46950.031.5958121
GTGGTAT10150.030.9111441
AGCCGTG952.4938345E-928.9468777
GGTAAAC400.00787001827.50124414
CCGTATT507.0282194E-427.50124214
GAGCCGT1004.312824E-927.4995336
CCGGTTT400.007872404527.49953331
ACGGCAA400.00787717927.49611716
TATCAAC54800.026.8588562
TGGTATC12000.026.3651892
CGGGGGC759.748968E-625.66623317
AGAGTAC29150.025.37850611
CGTACCA550.001227244924.996475
CAGAGTA29800.024.91723310
Produced by FastQC (version 0.11.5)