EGAF00005411700 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411700
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	284559
Sequences flagged as poor quality	0
Sequence length	91
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1119	0.39324006620771085	No Hit
GTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	810	0.28465098626295426	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	601	0.21120400338769815	No Hit
GGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	549	0.1929301129115579	No Hit
ACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	462	0.16235648846109244	No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC	422	0.1482996496332922	No Hit
GTGGTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTT	408	0.14337975604356215	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	402	0.1412712302193921	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	358	0.12580870750881187	No Hit
ATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	350	0.12299733974325185	No Hit
ACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	345	0.12124023488977681	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA	324	0.11386039450518169	No Hit
TATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	303	0.1064805541205866	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTAATA	20	3.02486E-5	84.998764	2
GCTTAGG	20	0.0032211752	63.749077	2
CTTAGGG	20	0.0032211752	63.749077	3
CGTGCAA	55	4.0563464E-10	61.82815	8
ACGTGCA	70	5.638867E-11	54.651672	7
ATACGTG	80	3.6379788E-12	53.12423	5
TATACGT	80	3.6379788E-12	53.12423	4
TACGTGC	80	2.1100277E-10	47.811806	6
ACGGGCT	45	2.9213568E-5	47.221542	5
TCGACTT	270	0.0	44.073437	2
TAACTAC	20	9.3080476E-4	42.50685	10-11
GTATCAA	2920	0.0	41.9172	1
CGACTTT	305	0.0	39.015827	3
CCTAGGC	45	0.001661062	37.777233	2
CCTACAC	45	0.001661062	37.777233	3
CGTCTTA	45	0.001661062	37.777233	1
GTCGACT	350	0.0	35.213776	1
TATCAAC	3690	0.0	34.322	2
TTATCAA	50	0.002785676	33.999508	1
ACCTACA	50	0.002785676	33.999508	2