EGAF00005411778 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411778
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2795719
Sequences flagged as poor quality	0
Sequence length	91
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATATACGCATTGTGGCAGTACATCAAGGGAAAAAAAAAAAAAAAAAAAA	11571	0.41388279723391375	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	9363	0.3349049028174863	No Hit
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8743	0.3127281389867866	No Hit
GTGGTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTT	6479	0.2317471820308121	No Hit
GTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6439	0.2303164230739928	No Hit
GGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6331	0.22645337389058054	No Hit
GTATCAACGCAGAGTACGGGCCAGATATACGCATTGTGGCAGTACATCAA	5534	0.19794550167595526	No Hit
GATATACGCATTGTGGCAGTACATCAAGGCAAAAAAAAAAAAAAAAAAAA	5496	0.1965862806669769	No Hit
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT	3549	0.12694408844379568	No Hit
GGTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3516	0.12576371230441974	No Hit
GAGTACGGGATACCAGCTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAA	3453	0.12351026694742927	No Hit
GATATACGCATTGTGGCAGTACATCAAGCCAAAAAAAAAAAAAAAAAAAA	3402	0.12168604927748461	No Hit
ACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2989	0.10691346304832496	No Hit
GTATCAACGCAGAGTACGGGATACCAGCTTATTCAAAAAAAAAAAAAAAA	2981	0.1066273112569611	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	5000	59.767284	1
TGGTATC	5545	53.883312	2
GCGTCAG	865	47.16973	4
AGCGTCA	855	46.726395	3
CGTCAGA	975	43.15577	5
GGTATCA	10335	38.868656	1
GTATCAA	18575	36.84472	1
GCAGCGT	1130	35.36125	1
CAGCGTC	1155	34.58967	2
TATCAAC	21710	31.714344	2
ATATACG	9010	29.340406	2
ATCAACG	23710	29.18256	3
TCAACGC	24305	28.451176	4
GATATAC	9140	28.416674	1
CAACGCA	24495	28.334597	5
ATACGCA	9535	27.547112	4
CGCATTG	9485	27.513086	7
AACGCAG	25485	27.35162	6
TATACGC	9705	27.19547	3
ACGCATT	9785	27.06145	6