FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005411799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005411799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44451
Sequences flagged as poor quality0
Sequence length61
%GC30

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3850.8661222469685721No Hit
GATATACGCATTGTGGCAGTACATCAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1080.24296416278598906No Hit
GTATCAACGCAGAGTACGGGGCAATTATTGATAACCTTGTTTCTGTCTCTTATACACATCT970.21821781287260128No Hit
GTATCAACGCAGAGTACGGGATACCAGCTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAA810.1822231220894918No Hit
ATTGATAACCTTGTTTTGCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA780.17547411756765877No Hit
GTATCAACGCAGAGTACGGGGCAATTATTGATAACCTTGTTTTGCACTAAAAAAAAAAAAA770.17322444939371442No Hit
AAACAAGGTTATCAATAATTGCCCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCT580.1304807540887719No Hit
GAGTACGGGGCAATTATTGATAACCTTGTTTTGCACTAAAAAAAAAAAAAAAAAAAAAAAA550.12373174956693887No Hit
GGTATCAACGCAGAGTACGGGGCAATTATTGATAACCTTGTTTTGCACTAAAAAAAAAAAA520.11698274504510583No Hit
ATTGATAACCTTGTTTTGCACTAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA490.11023374052327281No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)