EGAF00005411829 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411829
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12610
Sequences flagged as poor quality	0
Sequence length	61
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1892	15.00396510705789	No Hit
GATATACGCATTGTGGCAGTACATCAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	26	0.2061855670103093	No Hit
GTCAAGTAGGAAAGTCCCATAAGGTCATGTATCTGTCTCTTATACACATCTGACGCTGCCG	16	0.126883425852498	No Hit
GTCAAGTAGGAAAGTCCCATAAGGTCATGTATTGGGCAAAAAAAAAAAAAAAAAAAAAAAA	15	0.11895321173671689	No Hit
ATACATGACCTTATGGGACTTTCCTACTTGACCTGTCTCTTATACACATCTGACGCTGCCG	15	0.11895321173671689	No Hit
AAGTAGGAAAGTCCCATAAGGTCATGTATTGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA	14	0.11102299762093576	No Hit
GATATACGCATTGTGGCAGTACATCAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13	0.10309278350515465	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	55	5.456968E-12	50.19558	1
TGGTATC	65	0.0	46.535103	2
CCTACTT	30	0.0018549938	36.66402	23
TCCTACT	30	0.0018549938	36.66402	22
TTCCTAC	30	0.0018549938	36.66402	21
TACTTGA	30	0.0018549938	36.66402	25
CTACTTG	30	0.0018549938	36.66402	24
ATACATG	40	1.7560668E-4	34.50946	1
CATGACC	40	1.7980099E-4	34.37252	4
ACATGAC	40	1.7980099E-4	34.37252	3
ATGACCT	40	1.7980099E-4	34.37252	5
TACATGA	40	1.7980099E-4	34.37252	2
CTTTCCT	35	0.003950406	31.426302	19
TGACCTT	35	0.003950406	31.426302	6
TTTCCTA	35	0.003950406	31.426302	20
ACTTTCC	35	0.003950406	31.426302	18
ACCTTAT	35	0.003950406	31.426302	8
GACCTTA	35	0.003950406	31.426302	7
GACTTTC	35	0.003950406	31.426302	17
CTTTTTT	55	3.229174E-5	29.997833	2