FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005411847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005411847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2186
Sequences flagged as poor quality0
Sequence length61
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80.36596523330283626No Hit
GTATCAACGCAGAGTACGGGATACCAGCTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAA50.22872827081427266No Hit
GTATCAACGCAGAGTACGGGGCAATTATTGATAACCTTGTTTTGCACTAAAAAAAAAAAAA40.18298261665141813No Hit
GTATCAACGCAGAGTACGGGGCAATTATTGATAACCTTGTTTCTGTCTCTTATACACATCT40.18298261665141813No Hit
GAATGGAACGGAATGGAACGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATCA40.18298261665141813No Hit
GAATGGAATGGAATGGAATGGAATGGAATCAACCCGAGTGCAATGGAATGGAGTGGAATGG30.1372369624885636No Hit
GTAAGGGAGTTGAAAAGAATCAATCTGAATGTAATGGAATGGAATGGAACGGAATGGAATG30.1372369624885636No Hit
GAATTAACCAGAATAGAATGGAATGGAATGGAATGGAATGGAACGGAACGGAACGCAACGG30.1372369624885636No Hit
ATTCCATTCCATTGCAATCGAGTTGAATCCATTGCATTCCATTCCATTCCATTCCATTCCA30.1372369624885636No Hit
ATTGCATTCCGTTCCATTACATTCCCCTGCACTCGGGTTGATTCCATTCCATTCCATTCCA30.1372369624885636No Hit
GAACGGAACGGAACGGAACGGAGTGGAATGGAATGGAATGGAATTGTATGGAATGTAATGG30.1372369624885636No Hit
GTAATGGAACGGAATGCAATGGAATGGAATCATCCGGAATGGAATGGAATGGAATCAACCC30.1372369624885636No Hit
GAATGGAATGGAATTAAATGGAACGGAACGGAATGGAATGGAATGGAATGGAATGGAATGG30.1372369624885636No Hit
ATTGATAACCTTGTTTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.1372369624885636No Hit
GGTTAATTCCATTCCATTCCATTCGATTGCAATCGAGTTGATTCCATTCCATTCCATTCCA30.1372369624885636No Hit
GTGCAGGGGAATGGAATGGAATGGAATGCAATGGAATGGAATTTTCCGGAAAGGAATGGAA30.1372369624885636No Hit
AAACAAGGTTATCAATAATTGCCCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCT30.1372369624885636No Hit
GAATGGAATCATCCGGAATGGAATGGAATGGAATGGAATGCAAAGCAATGGAATCAACTCG30.1372369624885636No Hit
ATGTAATGGAACGGAATGCAATGGAATGGAATCATCCGGAATGGAATGGAATGGAATCAAC30.1372369624885636No Hit
GTATCAACGCAGAGTACGGGGGAATGTAATGGAACGGAATGCAATGGAATGGAATCATCCG30.1372369624885636No Hit
GAATAGAATGGAATGGAAAGAATTGGAATGGAATGGAATCGAATGGAATGGAATGGAATGG30.1372369624885636No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)