FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005411883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005411883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3071515
Sequences flagged as poor quality0
Sequence length61
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG354301.1535024246992118No Hit
GATATACGCATTGTGGCAGTACATCAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA156740.5103019194111049No Hit
GATATACGCATTGTGGCAGTACATCAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA93590.30470305370476786No Hit
GATATACGCATTGTGGCAGTACATCAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA38670.12589878284820358No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)