EGAF00005411912 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411912
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	353675
Sequences flagged as poor quality	0
Sequence length	91
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGT	3908	1.104969251431399	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1403	0.3966918781367074	No Hit
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1262	0.35682476850215594	No Hit
ATATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	922	0.26069131264579065	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	795	0.22478263942885415	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	693	0.19594260267194458	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGTCTT	645	0.182370820668693	TruSeq Adapter, Index 11 (95% over 23bp)
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	623	0.17615042058386937	No Hit
ATATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	600	0.16964727504064467	No Hit
GTGGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTT	588	0.16625432953983177	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	566	0.16003392945500813	No Hit
GTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	493	0.1393935109917297	No Hit
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	462	0.13062840178129637	No Hit
GGTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	373	0.10546405598360076	No Hit
TATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	362	0.10235385594118895	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCC	360	0.10178836502438679	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	735	0.0	60.140457	1
TGGTATC	820	0.0	59.08969	2
ATACGGG	175	0.0	58.289978	1
TCACGAG	25	0.007789562	51.003735	3
GGACGGT	25	0.007789562	51.003735	6
AAGTACG	405	0.0	50.374054	1
GGTACGG	40	9.307288E-4	42.503113	3
GCGTCAG	50	5.4419386E-5	42.503113	4
AGTATCA	175	0.0	41.288734	1
AGCGTCA	55	9.5442956E-5	38.639194	3
CGGGCAA	55	9.5442956E-5	38.639194	6
GCTATAG	45	0.0016608926	37.78054	3
GTATCAA	2730	0.0	37.67675	1
ATGGTAT	125	1.0913936E-11	37.402737	1
TATCAAC	3440	0.0	35.831112	2
ATATCAA	580	0.0	35.174988	1
GGTATCA	1510	0.0	34.62174	3
AGTCGAG	1105	0.0	32.69008	7
GTCGAGG	870	0.0	32.239178	8
GTCGAGT	240	0.0	31.872826	8