EGAF00005411935 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411935
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29658
Sequences flagged as poor quality	0
Sequence length	61
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3755	12.661002090498346	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	240	0.8092251669026906	No Hit
GTATCAACGCAGAGTACGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	100	0.3371771528761211	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	81	0.2731134938296581	No Hit
GGTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	79	0.2663699507721357	No Hit
TATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	39	0.13149908962168722	No Hit
GGTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	39	0.13149908962168722	No Hit
GGTATCAACGCAGAGTACGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	38	0.12812731809292602	No Hit
CTGTAGTCCTTTCTCTCAATTTTCTTTTAAATACATTTTTTACTCCATGAAGAAGCTTCAT	34	0.11464023197788119	No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGA	34	0.11464023197788119	No Hit
ATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	30	0.10115314586283633	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTGGA	15	0.005728399	55.0	2
CCACGGA	15	0.005728399	55.0	54
AAGAGAG	15	0.005728399	55.0	25
CTAAGGC	15	0.005728399	55.0	48
GGATAGC	15	0.005728399	55.0	6
ATAGCCT	15	0.005728399	55.0	8
AGGCCAC	15	0.005728399	55.0	51
GGCCACG	15	0.005728399	55.0	52
AGAGAGT	15	0.005728399	55.0	28
GCCACGG	15	0.005728399	55.0	53
GATAGCC	15	0.005728399	55.0	7
TAAGGCC	15	0.005728399	55.0	49
CACGGAG	15	0.005728399	55.0	55
GTGGTAT	80	9.094947E-12	37.812496	1
TGGTATC	85	1.8189894E-11	35.588234	2
GGTATCA	205	0.0	29.512197	1
CGGGGGA	50	6.87059E-4	27.5	17
CGGGAAA	50	6.87059E-4	27.5	17
AATTCTC	40	0.0077521107	27.499998	38
GTATCAA	405	0.0	26.481482	1