EGAF00005411969 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411969
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	649194
Sequences flagged as poor quality	0
Sequence length	61
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	18163	2.79777693570797	No Hit
GTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2382	0.36691651494006416	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1671	0.25739609423377297	No Hit
GGTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1013	0.15603964300347817	No Hit
GTATCAACGCAGAGTACGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	937	0.1443328188492192	No Hit
CTTCTAAGTCTTCATATTTTCTCTTAAAATCTTAAGCTATTAAAATTACGTTAAAAACTTA	846	0.13031543729609332	No Hit
GGTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	844	0.13000736297624438	No Hit
TATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	793	0.12215146782009692	No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGG	773	0.11907072462160771	No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGA	753	0.11598998142311852	No Hit
GTATTAATCTCTATCTTTCAAAGAGAAAAAAACTTATCTGCGGTTTCCTCAAGCTCCGCCT	694	0.10690178898757537	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	681	0.1048993059085574	No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAA	672	0.10351297146923724	No Hit
GAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	653	0.10058626543067248	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	2680	0.0	39.32677	1
TGGTATC	2775	0.0	37.971664	2
AGTAGTG	80	9.094947E-12	37.805824	5
AGTCTAT	30	0.0019244895	36.66867	44
TACGACA	30	0.0019259467	36.663017	4
ACGCTTA	30	0.0019266757	36.66019	5
CGGGTGC	30	0.0019281342	36.65454	6
AGTACGT	50	1.8200182E-5	32.996716	13
GTGTATA	355	0.0	31.781898	1
CTATGAC	35	0.0040972326	31.43029	47
TATCGGC	35	0.0040972326	31.43029	37
GACGTTA	35	0.0041049686	31.41818	7
AGACGTT	35	0.0041049686	31.41818	6
CCCAGGG	45	3.7908126E-4	30.559582	50
TGTATAA	380	0.0	30.40812	2
GTTAGAC	100	1.3096724E-10	30.24699	23
GTAGTGT	105	2.3101165E-10	28.8	6
GAGTAGT	110	3.9108272E-10	27.518473	1
CTATCCG	40	0.007865589	27.503624	48
CTAGAAG	40	0.007868549	27.501503	3