EGAF00005411975 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411975
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	328368
Sequences flagged as poor quality	0
Sequence length	61
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6669	2.0309530770355213	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1429	0.4351824781951956	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1240	0.3776251035423671	No Hit
GGTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	652	0.19855771573356723	No Hit
GGTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	603	0.18363543341616723	No Hit
GTATCAACGCAGAGTACGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	538	0.1638405691175754	No Hit
TATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	453	0.1379549773424938	No Hit
TATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	384	0.116941967548604	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATTA	15	0.005779246	55.00168	45
TGATGCC	15	0.005779246	55.00168	47
GTTGAAC	30	5.421316E-7	54.993298	3
GAAGCGG	15	0.0057827313	54.993298	25
AAGCGGA	15	0.0057827313	54.993298	26
CCTAATC	15	0.0057827313	54.993298	3
GTGGTAT	895	0.0	44.615612	1
CGGGGAT	25	7.852964E-4	43.994637	17
CCAACGA	25	7.852964E-4	43.994637	14
TCGTTGA	40	3.893516E-6	41.307903	1
TGGTATC	1005	0.0	38.862827	2
CCCAACG	30	0.0019233334	36.667786	13
ACGATCC	30	0.001924773	36.6622	17
TCAACGA	30	0.001924773	36.6622	3
AGTACGA	35	0.0040917415	31.434317	2
GACGTCA	35	0.0040947953	31.42953	10
GGACGTC	35	0.0040947953	31.42953	9
ACCACTA	35	0.0040947953	31.42953	12
GGGGATT	35	0.0040978505	31.424742	18
CTGTCGG	35	0.0040978505	31.424742	27