EGAF00005412027 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412027
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	371349
Sequences flagged as poor quality	0
Sequence length	61
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10317	2.778249032581211	No Hit
GTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3235	0.8711481652030839	No Hit
GGTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1449	0.3901989772424323	No Hit
TATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1242	0.33445626620779917	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	787	0.2119300173152479	No Hit
GTATCAACGCAGAGTACGGGGACCATGCCGGCCAGAACCTGTTGGATCAACAACCCCAATC	669	0.18015397914091597	No Hit
ATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	612	0.164804536971959	No Hit
CTCCTGGGATGTGAATAAAGAAAATACGTCTGAAAGGTGAGGATTTCAAACAGTAGATTTC	536	0.14433861408001636	No Hit
GTATCAACGCAGAGTACGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	520	0.14002999873434424	No Hit
GAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	491	0.1322206334203135	No Hit
GGTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	438	0.11794834508777458	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAA	414	0.11148542206926637	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCCGTACTCTGCGTTGATA	399	0.10744609518269876	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCC	15	0.0057751047	55.013073	3
ATCTATG	15	0.0057812664	54.99825	47
CGTTAGT	15	0.0057812664	54.99825	33
CCTGGCT	15	0.0057812664	54.99825	30
CCGTTAG	15	0.0057812664	54.99825	32
CAGACTA	40	7.1233444E-8	48.12995	10
GCAGACT	45	1.7984712E-7	42.782177	9
GTGGTAT	2350	0.0	38.29053	1
CAACTCA	80	9.094947E-12	37.8113	5
GTGCTAT	30	0.0019178902	36.690212	1
AGACTAC	45	8.821829E-6	36.670437	11
GTTAGTG	30	0.0019242468	36.6655	34
TCGGTGA	30	0.0019242468	36.6655	25
TGGTATC	2520	0.0	35.693005	2
AACTCAG	85	7.548806E-10	32.35191	6
GTGTATA	270	0.0	31.594349	1
GGTAAGC	35	0.0040967297	31.42757	19
ATACCTA	35	0.0040967297	31.42757	5
TATCCTG	55	3.4853023E-5	29.999044	5
TGTATAA	285	0.0	29.919388	2