EGAF00005412031 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412031
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681896
Sequences flagged as poor quality	0
Sequence length	61
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7160	1.05001349179347	No Hit
GTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3298	0.4836514659126905	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1735	0.25443762685218857	No Hit
GGTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1346	0.19739080446285065	No Hit
TATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1109	0.16263477128477072	No Hit
GTATCAACGCAGAGTACGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1048	0.1536891256144632	No Hit
CTTCTAAGTCTTCATATTTTCTCTTAAAATCTTAAGCTATTAAAATTACGTTAAAAACTTA	1007	0.1476764785245844	No Hit
GTATTAATCTCTATCTTTCAAAGAGAAAAAAACTTATCTGCGGTTTCCTCAAGCTCCGCCT	883	0.12949188732592654	No Hit
GGTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	815	0.119519692152469	No Hit
GGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTG	726	0.10646784846956134	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	688	0.10089515116674683	No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAA	688	0.10089515116674683	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACTTGA	15	0.0057624285	55.048603	1
CTCCGGA	15	0.0057825437	55.000145	34
TACCCGA	25	7.8541215E-4	44.00012	52
GTGGTAT	3085	0.0	38.007626	1
TGGTATC	3165	0.0	36.672146	2
TACGGTG	30	0.0019257421	36.664074	15
GTGTATA	380	0.0	34.043217	1
CTATACG	50	1.818881E-5	33.000088	27
ACTTAGC	50	1.818881E-5	33.000088	44
GTACACG	35	0.004080791	31.456345	1
GAGCGAC	35	0.004098421	31.428658	43
CGACTGA	35	0.004098421	31.428658	46
GACTCGA	35	0.004098421	31.428658	42
CCGAACT	35	0.004099893	31.42635	14
TACGGTC	35	0.0041028378	31.42174	7
CCTATGT	35	0.0041028378	31.42174	4
TTAAACG	45	3.7938822E-4	30.555637	22
TCGACTG	45	3.7955135E-4	30.553394	18
ATACCAT	45	3.7987783E-4	30.548914	6
CTTTCGA	55	3.4852255E-5	30.004482	38