EGAF00005412033 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412033
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	444568
Sequences flagged as poor quality	0
Sequence length	61
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	29023	6.528360115887784	No Hit
GTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4127	0.9283169278940455	No Hit
GGTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1733	0.38981663097658853	No Hit
TATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1408	0.31671195407676667	No Hit
GAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	874	0.19659534649367474	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	864	0.1943459718198341	No Hit
ATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	819	0.18422378578755108	No Hit
GTATCAACGCAGAGTACGGGGACCATGCCGGCCAGAACCTGTTGGATCAACAACCCCAATC	778	0.1750013496248043	No Hit
GTATCAACGCAGAGTACGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	515	0.11584279570279463	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCCGTACTCTGCGTTGATA	485	0.10909467168127261	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGAC	15	0.005779553	55.004166	3
GATAATG	15	0.005779553	55.004166	2
GGTTACA	30	5.4183147E-7	55.004166	2
TGCTATC	35	1.5689166E-6	47.14643	2
GTGCTAT	40	3.908086E-6	41.290295	1
TTACACC	40	3.9384504E-6	41.243835	4
GCTATCA	50	4.1144995E-7	38.502914	3
GTGGTAT	2965	0.0	36.764378	1
CGTGGGC	30	0.001915149	36.702488	1
GATATCA	30	0.001915149	36.702488	1
ATAATGA	30	0.0019236383	36.669445	43
CTAGAGA	30	0.0019247015	36.665318	32
CTAAAAT	30	0.0019247015	36.665318	24
TGGTATC	3075	0.0	35.417313	2
GTGTATA	395	0.0	34.84413	1
ATATTAC	40	1.8988297E-4	34.3776	3
ACCGTGT	40	1.900086E-4	34.373734	8
ATAATGG	50	1.816555E-5	33.0025	3
TGTATAA	450	0.0	31.780184	2
GTAGATC	35	0.004095434	31.430952	54