EGAF00005412107 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412107
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	551612
Sequences flagged as poor quality	0
Sequence length	61
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2508	0.4546674111513165	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	818	0.1482926404791774	No Hit
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTCATCCAATCCAA	651	0.1180177371050666	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	570	0.10333350253439011	No Hit
ATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGGCATACTCATCTTTTTCAGTGG	564	0.10224578145508074	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACGA	30	3.488118E-5	45.834923	23
ACGGGCG	25	7.85508E-4	43.99753	16
ACGAGTC	35	8.6600834E-5	39.28707	26
GTGGTAT	790	0.0	38.3168	1
TGGTATC	800	0.0	36.445377	2
TACCGCA	40	1.8988665E-4	34.379307	40
TGAGCGA	40	1.8998791E-4	34.37619	49
TGCGACG	40	1.9008922E-4	34.37307	22
CAATGCG	40	1.9008922E-4	34.37307	19
ACGACAC	35	0.004093469	31.435362	43
CGACGAG	45	3.7922378E-4	30.556614	24
AACGATA	45	3.7922378E-4	30.556614	28
ACCGCAT	50	7.022098E-4	27.503448	41
AATACCG	60	6.310406E-5	27.500954	38
ATGCGAC	50	7.025823E-4	27.500952	21
ATACCGC	50	7.025823E-4	27.500952	39
AGCGAGT	50	7.02955E-4	27.498457	51
GATTCGT	40	0.007871794	27.498457	31
TCGACCG	40	0.007871794	27.498457	50
CGATAGC	50	7.02955E-4	27.498457	30