EGAF00005412137 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412137
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	98143
Sequences flagged as poor quality	0
Sequence length	61
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2241	2.283402789806711	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	274	0.2791844553355818	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	200	0.20378427396757792	No Hit
GTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	175	0.17831123972163068	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	154	0.156913890955035	No Hit
GTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCAGTACCATTG	153	0.1558949695851971	No Hit
GGTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	112	0.11411919342184362	No Hit
GTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	112	0.11411919342184362	No Hit
CCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAA	110	0.11208135068216786	No Hit
TCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTC	99	0.10087321561395106	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCTGAG	15	0.005759448	55.020397	14
ACAGATC	15	0.005759448	55.020397	1
GGTCTAG	15	0.005759448	55.020397	1
GAGCTTC	15	0.0057710856	54.992355	48
CGCCCGT	15	0.0057710856	54.992355	36
TAGCCTG	25	7.8069884E-4	44.01632	12
GTGGTAT	345	0.0	43.856842	1
TGGTATC	355	0.0	43.374256	2
TCATTTC	30	0.0019183699	36.66157	16
CATTATC	30	0.0019183699	36.66157	48
TTAGTTT	30	0.0019183699	36.66157	52
TCGAGGG	110	0.0	32.512054	9
GGGGGCT	35	0.0040741344	31.44023	45
GGGGCTT	35	0.0040741344	31.44023	46
ATTAGTT	35	0.0040843235	31.424204	47
GGGCTTC	35	0.0040843235	31.424204	47
GTGATAA	35	0.0040843235	31.424204	51
TGAATGA	35	0.0040843235	31.424204	36
CAATCGG	35	0.0040843235	31.424204	53
GTGAATG	35	0.0040843235	31.424204	35