EGAF00005412147 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412147
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	237954
Sequences flagged as poor quality	0
Sequence length	61
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3358	1.4111971221328492	No Hit
GTATCAACGCAGAGTACGGGGACCATGCCGGCCAGAACCTGTTGGATCAACAACCCCAATC	542	0.2277751161989292	No Hit
GTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	418	0.17566420400581623	No Hit
GGTTATACCTGCTTGCACGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	354	0.1487682493254999	No Hit
GTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	338	0.1420442606554208	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCCGTACTCTGCGTTGATA	333	0.1399430141960211	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAA	305	0.12817603402338265	No Hit
GTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	287	0.12061154676954369	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATCAG	15	0.005762096	55.038296	1
GTGGTAT	1210	0.0	37.753544	1
TGGTATC	1215	0.0	37.348106	2
CACTGGC	30	0.0019239297	36.66134	7
GCTAGTC	30	0.0019239297	36.66134	7
TGGCTAG	30	0.0019259172	36.653633	5
GGCTAGT	30	0.0019259172	36.653633	6
CCCCTCC	40	1.8986463E-4	34.370007	8
TAGTCCA	40	1.8986463E-4	34.370007	9
GGATACC	60	1.7115854E-6	32.07867	19
GGGATAC	60	1.7115854E-6	32.07867	18
GAAGGCG	95	7.094059E-11	31.830786	20
GTGTATA	35	0.0040792297	31.450455	1
ATCCCGT	35	0.0040918547	31.430614	21
CGAATAG	45	3.7851394E-4	30.55754	53
CTTATGC	45	3.789809E-4	30.551117	19
AAGGCGA	105	2.2737368E-10	28.811398	21
GTATCAA	4840	0.0	28.20144	1
CAGAGTA	2840	0.0	27.68964	10
TATGCGG	40	0.007858295	27.50179	21