EGAF00005412183 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412183
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	462114
Sequences flagged as poor quality	0
Sequence length	61
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3457	0.7480838061603847	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2107	0.4559480993867314	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	783	0.16943870992871887	No Hit
GTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	587	0.12702493324158107	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	546	0.1181526636284553	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAA	527	0.11404112405164094	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACAA	15	0.0057822866	54.99794	20
TCGGCCG	15	0.0057822866	54.99794	27
ATCGTCA	15	0.0057822866	54.99794	10
TGCGACG	15	0.0057822866	54.99794	22
TGCGACA	15	0.0057822866	54.99794	19
GCGGCCA	15	0.0057822866	54.99794	21
GTCTTAC	25	7.815436E-4	44.04125	1
GTGGTAT	1425	0.0	44.041245	1
AGGTACG	25	7.836307E-4	44.01741	2
CGGTTTG	25	7.8530353E-4	43.998356	54
TGGTATC	1475	0.0	42.52529	2
GGTACGG	30	0.0019217203	36.677204	3
AACACCG	30	0.0019237641	36.669262	5
AAGTAAC	30	0.0019247867	36.665295	42
CCGCTCG	30	0.0019247867	36.665295	10
GTCGTCT	30	0.0019247867	36.665295	53
TCTCCGA	35	0.004097871	31.427395	50
CGGCCAA	45	3.7928985E-4	30.554413	22
GTCAGCG	45	3.7928985E-4	30.554413	43
GTAGCGC	45	3.7928985E-4	30.554413	13