EGAF00005412193 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412193
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1681382
Sequences flagged as poor quality	0
Sequence length	61
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10577	0.6290658517814512	No Hit
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTCATCCAATCCAA	2492	0.14821141180290975	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAA	2262	0.13453218840215966	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGA	2089	0.12424303340942153	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCA	1990	0.1183550198586639	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAAC	1801	0.10711426671630836	No Hit
ATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGGCATACTCATCTTTTTCAGTGG	1761	0.10473527134226487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	995	0.0	46.48924	1
TACGAAC	115	0.0	43.037426	17
CCGAGCT	45	1.805729E-7	42.775578	9
TGGTATC	1125	0.0	41.33727	2
ACGTCAA	35	8.6659806E-5	39.28837	51
GGATACG	130	0.0	38.073833	14
CGAGCCG	95	0.0	37.627403	33
GTAGTCG	30	0.0019243935	36.67242	48
GCACCCG	30	0.0019252369	36.669147	50
GATCGAC	30	0.0019272062	36.66151	16
GGGCGTA	30	0.0019274877	36.660423	25
CTACCGA	100	0.0	35.746037	29
CGATTTA	110	0.0	34.99508	22
AGCTACG	120	0.0	32.081684	10
ACTACCG	120	0.0	32.079777	28
CTTACGC	35	0.004100006	31.428825	36
TCGTACC	70	1.6112062E-7	31.425087	28
GACTAGC	35	0.0041053817	31.420412	7
CGAACAA	160	0.0	30.93315	19
GAGTAGT	90	1.382432E-9	30.593119	1