EGAF00005412204 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412204
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	456345
Sequences flagged as poor quality	0
Sequence length	91
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1892	0.4145986041262641	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1617	0.35433717910791174	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1105	0.24214136234647032	No Hit
GTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	718	0.15733710241155266	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	676	0.14813353931784068	No Hit
GTGGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTT	642	0.14068303586102618	No Hit
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	596	0.13060294294886546	No Hit
ATATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	549	0.1203037175820925	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATACG	100	0.0	46.741924	3
TATACGT	95	2.3646862E-11	44.729115	4
GTGGTAT	850	0.0	44.506943	1
ATACGTG	100	4.0017767E-11	42.49266	5
ATACCGA	80	1.128501E-8	42.49266	6
TACCGAC	70	1.8982792E-7	42.49266	7
TGGTATC	1000	0.0	39.943096	2
GTATCAA	3635	0.0	39.173923	1
AAGTACG	185	0.0	39.06015	1
ATACGGG	110	1.1277734E-10	38.642395	1
TATCAAC	4405	0.0	37.042408	2
ACGTGCA	85	8.696388E-7	34.993954	7
GCGAGAT	50	0.0027895942	33.994125	3
GGTATCA	1865	0.0	33.95972	1
ATCAACG	4805	0.0	33.95875	3
TCAACGC	4970	0.0	32.83135	4
TACGTGC	130	6.7848305E-10	32.68666	6
CAACGCA	5030	0.0	32.524204	5
AACGCAG	5210	0.0	31.482084	6
GTCGAGG	845	0.0	31.178045	8