EGAF00005412209 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412209
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	112153
Sequences flagged as poor quality	0
Sequence length	61
%GC	36

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3321	2.9611334516241206	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAA	332	0.29602418125239627	No Hit
GTATCAACGCAGAGTACGGGGACCATGCCGGCCAGAACCTGTTGGATCAACAACCCCAATC	250	0.22290977503945505	No Hit
GTATCAACGCAGAGTACGGGAACCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	192	0.17119470723030147	No Hit
GTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	174	0.15514520342746072	No Hit
GTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	167	0.14890372972635596	No Hit
ATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	162	0.14444553422556686	No Hit
GGTTATACCTGCTTGCACGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	148	0.13196258682335738	No Hit
GGATTGGGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCCGTACTCTGCGTTGATA	143	0.12750439132256827	No Hit
GTATCAACGCAGAGTACGGGCACGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAA	142	0.12661275222241045	No Hit
GGGTTGTTGATCCAACAGGTTCTGGCCGGCATGGTCCCAAAAAAAAAAAAAAAAAAAAAAA	138	0.12304619582177917	No Hit
GTATCAACGCAGAGTACGGGACCATGCCGGCCAGAACCTGTTGGATCAACAACCCCAATCC	131	0.11680472212067443	No Hit
GTATCAACGCAGAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA	115	0.10253849651814932	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACAGA	15	0.0057687587	55.00312	5
AACACAG	15	0.0057687587	55.00312	4
GGGATAC	25	7.841107E-4	43.98288	18
TGTATAA	65	1.9444997E-9	38.079086	2
ACGTAAG	30	0.0019176942	36.668747	24
GTGCCCC	30	0.0019176942	36.668747	9
GGATACC	30	0.0019219009	36.6524	19
AGCAATC	30	0.0019219009	36.6524	46
AAGCAAT	30	0.0019219009	36.6524	45
GTGGTAT	580	0.0	35.610012	1
TGGTATC	590	0.0	35.42574	2
GTGTATA	70	3.95994E-9	35.40653	1
GACTGAT	35	0.0040828786	31.430357	21
ACGGGCC	80	1.4822945E-8	30.925463	16
CGGGACC	110	1.2732926E-11	29.988327	17
GTATCAA	2915	0.0	28.908245	1
AGAGTAC	1645	0.0	27.919518	11
CAGAGTA	1650	0.0	27.834913	10
GGTATCA	1340	0.0	27.74392	1
CACTTAC	40	0.0078241285	27.513832	40