EGAF00005412213 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412213
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	289192
Sequences flagged as poor quality	0
Sequence length	61
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3000	1.0373730946914161	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	633	0.2188857229798888	No Hit
GTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	590	0.20401670862264515	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	535	0.18499820188663585	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATGTCG	15	0.0057772337	55.004845	52
CCTAAAT	15	0.0057772337	55.004845	55
TGATGTC	15	0.0057772337	55.004845	51
CGTTGCG	15	0.00578119	54.99533	25
TGCGAGT	15	0.00578119	54.99533	28
CACGTTG	15	0.00578119	54.99533	23
GTTGCGA	15	0.00578119	54.99533	26
GTGGTAT	1325	0.0	40.703953	1
TGGTATC	1360	0.0	39.642704	2
GCCTTTG	35	8.6647815E-5	39.275585	7
ATTATAT	30	0.0019207775	36.676243	3
CTGCTTA	30	0.0019240443	36.663555	18
TCTGCCC	30	0.0019240443	36.663555	22
GGTAAGG	30	0.0019240443	36.663555	33
AGCCTCT	40	1.8970534E-4	34.378025	54
ACTAGCA	35	0.004089374	31.436775	2
ATCCAGT	35	0.00409284	31.43134	37
ATGCCAA	35	0.00409284	31.43134	37
CCTGCAA	35	0.00409284	31.43134	45
CTAGCCC	35	0.00409284	31.43134	4