EGAF00005412215 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412215
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	150047
Sequences flagged as poor quality	0
Sequence length	61
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1045	0.6964484461535385	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	497	0.3312295480749365	No Hit
GTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA	339	0.22592920884789433	No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	325	0.21659879904296653	No Hit
GGTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	244	0.1626157137430272	No Hit
GGTATCAACGCAGAGTACGGGGTATAAGACGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA	159	0.10596679707025132	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTTCCG	15	0.00577204	55.004333	42
GCGACGT	35	1.5618771E-6	47.146572	35
GACTCAC	35	1.5618771E-6	47.146572	53
GGGTATC	25	7.831524E-4	44.00347	3
AGGGTAT	25	7.831524E-4	44.00347	2
ATAGACT	40	3.914811E-6	41.25325	50
GATAGAC	40	3.914811E-6	41.25325	49
GTGGTAT	560	0.0	40.78935	1
TGGTATC	575	0.0	39.69878	2
CAGGGTA	30	0.0019132672	36.694035	1
AGACTCA	45	8.7882145E-6	36.669556	52
TAGACTC	45	8.7882145E-6	36.669556	51
GATCCAG	45	8.7882145E-6	36.669556	43
GCACATC	45	8.7882145E-6	36.669556	23
TCCAGAT	45	8.7882145E-6	36.669556	45
TCATAGT	45	8.7882145E-6	36.669556	28
GTGCGAC	45	8.7882145E-6	36.669556	33
CGACACT	45	8.808354E-6	36.65733	14
TGCGACG	55	8.627685E-7	35.002758	34
GTCTATA	50	1.8002878E-5	33.024635	1