FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005412338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005412338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5115464
Sequences flagged as poor quality0
Sequence length91
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT102290.19996231035933398No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT72560.14184441528666802No Hit
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59780.11686134434725766No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)