FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005412359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005412359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66
Sequences flagged as poor quality0
Sequence length61
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAAGCACCTAAAGAAAAAACACTACAGAAAAGAAACGAAATCCAATAGTTTTATCTCCT11.5151515151515151No Hit
AGACAGCACTGTGTTGGCATACAAGACTATACGGATGTCCACGTCACACTTCATGATGGAG11.5151515151515151No Hit
CCCCTGGAGTTTCAATGAAAAGGCAGAAAGACAAACCGAAGGACCTCAACATCAAGCCTAC11.5151515151515151No Hit
GTCTCGCTCTGTTGCCTAGGCTGGAGTTCAGTGGCGCGATCTCTGCTCACTGCAAGCTCCG11.5151515151515151No Hit
ATTAATAGAAATCAATATCTAATACAAAATTATATTATGTATTTAAGTTACCAATATAGAT11.5151515151515151No Hit
GTCTGTGGTCTTCTTTTTGTGCTGTGGGCTTCTGTTTAGTTTCTGTCTCTTATACACATCT11.5151515151515151No Hit
GCACACTACTCCATGCAAAAAAAACAAAAATTAGCACATTCATATTGCACTGTAAACCACA11.5151515151515151No Hit
ACCAAGAATGCTGTGATATTTTGACTCACTGAGCTTTGGCTGTTTCACTGCATGAAAATCC11.5151515151515151No Hit
GAGTACGGGTGATGGCAAATGAGCAGGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.5151515151515151No Hit
CTGATGAACAGTGAGACCCCATCTCTACAAAAAAAAAAAAAATTAGCAACATGTGTGGGTT11.5151515151515151No Hit
GTGTGCGGGGGTGGGGGGGCGGGGGGGGGGGGGGGGAGGGGGGTGGGGGGCCGGGCGTGGG11.5151515151515151No Hit
GTAATACATGGCGGGTATGGTTTTCTACTGTTTAAGAAGATTATATATAATAGCATATGCG11.5151515151515151No Hit
CAAAAAAATCATACAAAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAACAC11.5151515151515151No Hit
AGATTGTCTACTGTGGGCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGGAT11.5151515151515151No Hit
GGGGGGCGGGGGGCCCGCGGGGGGCTGGGGGGGGTGCGGGGGGGGGGGGGGGGGGGGGGGG11.5151515151515151No Hit
AAACTCAGTATCACAGCAGCATGATCTCCTGGTGAAGAAGAAAAGGTTATATAAAACCGAT11.5151515151515151No Hit
ATAAAGTACCAATGACAGCAAATTATTTATTAAAGTATAATTTAGAGCTGTTTTCTCTAAT11.5151515151515151No Hit
GGTGTACGCGGTTTGTTTTTTTGTGAAGGTAAAGGGTAACTATGGACGACGAAGACCATGG11.5151515151515151No Hit
GTCGTATCTATAATACAATCATAATCATTACAAACAAAAAACTAATCAGGCTAATAATGAA11.5151515151515151No Hit
GTCCACAAGAAAGCAAAGCAACATGTTTGAAGGGGTATGGAGTGCTAACTCTGTGCCACTT11.5151515151515151No Hit
GAATGGAATAGAATGGAATGGAATGGAATGGAATCAGCTCCATTGCAATTGAATGGAAATA11.5151515151515151No Hit
ACGCAGAGTCGACGTTTGTGTTTATTTTTGAATTTTTTTATATATTGTTAGTGTATATTAT11.5151515151515151No Hit
GTCTTGAACTCCTGGGCTACAGTGATCCTCCTGCCTTATCCTCCTAAATAGCTGGGACTAC11.5151515151515151No Hit
GTATAAACACAAAGTACAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACCACA11.5151515151515151No Hit
ATCTAAAAGTAAAAAACATTCATAACAGCAACCTCCATACAATTTGATATTAAGATATAAT11.5151515151515151No Hit
GAGTTGATGCTACTGACTGGCCGATGAACTCGCAAGTGTAGGTAGCTGTCTCTTATACACA11.5151515151515151No Hit
GGTATCAACGCAGAGTACGGGATGAATGCAAGGCCACACAAGGTCTGTCTCTTATACACAT11.5151515151515151No Hit
TCTTATACACATCTGACGCTGCCGACGAATTAGACGGTGTAGATCTCGGTGGTCGCCGTAT11.5151515151515151Illumina Single End PCR Primer 1 (100% over 25bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.5151515151515151No Hit
ACTCTCTCCTATCATTGGACTGCATCTAAGTATTTCATAATGTAAAATAATACTGAACAGG11.5151515151515151No Hit
CGCCTCCCGGGTTCAGGCCATTCTCCTGCCTCAGGGGCCCGAGTAGCTGGGCGTACCGGCC11.5151515151515151No Hit
GAGTACGGGAGATCGGAAGAGCACACGCCTGAACTCTAGTCACCCTGTCTCTTATACACAT11.5151515151515151Illumina Multiplexing PCR Primer 2.01 (96% over 27bp)
CTTAATTAATTACACCAGTAAATGGAAAATCATAGAAAAATCTCAAATTACACAAAAATCC11.5151515151515151No Hit
GCGTCTTGGGGGCGGGGCGGCCGGGGGGTGGGGGGGGCGGGGGGGGGCGGGTGGAGGGGGG11.5151515151515151No Hit
AAATAATACTGTTCTTTTTAAAATATTTTATATTCAAAATTTTAGCGTTTTCCCCATTCTG11.5151515151515151No Hit
CTGTATGATATATCTTAAGTGTACACACCTGACAAATATGTGTGTTATAAGTTAGATATAT11.5151515151515151No Hit
CATCTGAGCTGCCGATTCCTCAGCGTCTAGGGGGACCTGCCCCCCAGGCCCCTCCAGGGCC11.5151515151515151No Hit
CAGGTGGTATCAACGCTGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAA11.5151515151515151No Hit
GTGCTATCAACGCAGCGTCGACGTGTTTTTTATAATAATTTTTTTATTATAACGAAACCAA11.5151515151515151No Hit
CCACACGGGGGGCCCCCCGGTGGCGCGGGTGGCGGCGGGGGGGGTCGGGGTTGGGGGGCCC11.5151515151515151No Hit
GAGGATGCATCAAGCTACTTACCTACAAGTCAAAATGCTGTCTCTTATACAAATCTGAAGC11.5151515151515151No Hit
CTATCCCCCAGGTAACAAACATTTACTATATTACTTTGTCATTACTTTTGTGAGACAAGCA11.5151515151515151No Hit
GTCACAGCAAAGCAAGCACCATCGTCAAGGATCTGAAAATCTGATTCCTGGGAACCCCAGA11.5151515151515151No Hit
GGTGAGGGGAGACCGAGGGGAGGGGAGACGGGGCTGGTGAGGGAGGCGGCGCTCGCCCTGG11.5151515151515151No Hit
GAATGGGATGGATTGCAAAGGAATGGAATGGAATTAAATTGAATGAAATAGAAAGGAAGGG11.5151515151515151No Hit
AGTTATATGTGTATTAGCGGAAAGCACTGGGAAGTGCTACCGTAGAGGGTGATAGTCCCGT11.5151515151515151No Hit
GTCCAGCCCCTTTAACTTTACGATACTCTTTAACCCCGTACTCTGCGTTGATACTGTCTCT11.5151515151515151No Hit
CTCCAACACATTCGTGAGAAGCAACCAACAGACATTGTTGAAAAATGGAGAAAGCTAAGAT11.5151515151515151No Hit
ACTAAAAATTGACCTATCCCAGAAAACTATCATTATCTACAATATCAAAAAGCATTATCTA11.5151515151515151No Hit
CCACCTCCCCAGTTCAAGAGACTCTCCTGCCTCCACCTTCTGAGTAGCTGGGACTATAGGC11.5151515151515151No Hit
CTCACTAGCTGAGAGATACCCTAAAAAATCCTAATACACTAATTCAGAAAGCAATTCCTCA11.5151515151515151No Hit
TTGCTAGTCCCCGTCTTCACAGAAAAATTTAAAAATTATCCTGACATGGTAGCTTGAGTCT11.5151515151515151No Hit
GTAAGGATCAGACCAGCGTCAAGACGAGCCCCACCTACGCCCGTATAAACACTTAGCCAAC11.5151515151515151No Hit
GCACAAAATTGTAAACAGTGAAATTTCCATCCATAGGAAAATGTATAGACAAACTACAATA11.5151515151515151No Hit
CCAGCAAGGGTCTCTGGCCCAATGAGTGAGTTCTGTCTCTTATACACATCTGACGCTGCCG11.5151515151515151No Hit
GAGGTTTTCCTCAGGAATATCATCTTGGAATGGAGGTATATCATTAGGAAGAGTTCTGCTG11.5151515151515151No Hit
CTTACTACACAAATGACAAAACAGTTGACCTCTTGTGTCCAATGAGTGCTCAAGTGATACT11.5151515151515151No Hit
AACATACAAACAAAACATAAAAACAATATGTATTCCACAGAAACCACAAAACATCTAAATT11.5151515151515151No Hit
ATTCCGCTTGCTCTTTCGCTATCTTCTGTCCACTAGTTTCATCCTAAGCTGCGAGACGGAC11.5151515151515151No Hit
CTAAGAAACAGATGACGCCTCACCCGCCTGGTATTTTAAAAATAAATTTGCAACTCTTAAG11.5151515151515151No Hit
GAGTCGAGGGGTTGTTTTTTTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTTTTTTTTGTT11.5151515151515151No Hit
TGCCACATCAGAGAAATCTTGCTTCCCCTTCTGCAGTAGCTGAGTCTTCATCTCTACGTTC11.5151515151515151No Hit
GAAAACAGAACTTCGTGATAAAGTTCTGTAAATATCCTCTGCGCTCGTAGGAAATTTGAGA11.5151515151515151No Hit
CACAACGAAGAGAACGGGATCACAGGTGCATCAAAGAAGAAATTGTATTACAAATTCTTAA11.5151515151515151No Hit
GAATATACTGTCCATGTTGAATATATCCTCTATAAGAAATATTGGAGTAAAAAATGACTGA11.5151515151515151No Hit
GAATGGTACTGAATAGAAAGTAATGGAACGAATTGTAATTGAATGGAATTGAATGGAATGG11.5151515151515151No Hit

[WARN]Adapter Content

Adapter graph