FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005412374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005412374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91
Sequences flagged as poor quality0
Sequence length91
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAAATTTTACAGCATCTCGAGACATCCCTACGGCAAGGCATTTCTGTA11.098901098901099No Hit
GTGTTTTGGTTTGTGGTCTTTTTGTGATTTGTTGTTTTCTTGTTAGTTTT11.098901098901099No Hit
ATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTCTT11.098901098901099RNA PCR Primer, Index 41 (95% over 22bp)
AAGTCAGACAGCACAAAAAGCTCAGCATGTGGTGAACATCCCACAACCAC11.098901098901099No Hit
GTGTAGTACAAGAGATAGAAAGACCAGTCCTTGCTGAAAGACAAGTCTGA11.098901098901099No Hit
AACATGAAATCCAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATCA11.098901098901099No Hit
CTCTAAACTCTTTTTGTATAAATAAGGATTATCCTGGGCATAATTCATTT11.098901098901099No Hit
ACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAAACTGGGAGGTGGAGGTT11.098901098901099No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.098901098901099No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA11.098901098901099No Hit
CTACCAGAAGATTCATACACTTTTGAGACTCCAGTGAGACGCTGTTTTCA11.098901098901099No Hit
ATTCTATACTCAAAAGTAAAATAAAACAAAAAATTAAAATAAAAAAAATA11.098901098901099No Hit
AAAAAATAACAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAA11.098901098901099No Hit
AGACAGACATTCCACAAGCATTGCCTTCTTATTTTACTTCTTTTAGCTGT11.098901098901099No Hit
ATTTTTTTTTGGTTTGTATCCCGTACTCTGCGTTGATACCTGTCTCTTAT11.098901098901099No Hit
AACCTGGAAACAAGCAATACAACTTCATAAGACACACTACTAGCTGATTT11.098901098901099No Hit
GAGTTAGAAAATCATTATTATTATAGTAACAAAAAATAAATAAATCATAA11.098901098901099No Hit
CTTCTGAGCTTTCTGGGCAGACTTGGTGCCCTTGCCAGCTCCAGCAGCCT11.098901098901099No Hit
GTGTACAATCATGTAACTGAAACTTTTCAACCCCTCGTGGCACATCTAAT11.098901098901099No Hit
GCCGTGCTCCCGGTGGAAGCAAGGGAGCCCAGCCGGAGCCATGGCCAGTA11.098901098901099No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGCTACCTCGCGTATGCCGT11.098901098901099No Hit
CTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGGCAGTGCCTTGA11.098901098901099No Hit
GTATCAACGCAGAGTACGGGATGAAAAAAAATAAAAAAAATTAAAAAATA11.098901098901099No Hit
AATTTAACTAAACAATAAAACAGCATAAGCAAACTACTTTGGCAAACATA11.098901098901099No Hit
AATTACAGGCATCCGCCACCAAGCCCACAAAAAAATAAACTATAACTAGA11.098901098901099No Hit
ACATTGTTTCACACATACATCAAACAGGCCAAAAAAAATAAACAGCAACT11.098901098901099No Hit
GGTATCAACGCAGAGTACGGGGACTGTCTCTTATACACATCTCCGAGCCC11.098901098901099No Hit
TATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT11.098901098901099No Hit
ACTCAGACACCAGATAATAAATTATATAATATTAAGGGGGTGAACAGCTG11.098901098901099No Hit
CCTAGAGGTGGAGGAGAAATGTGCAATCATGGAGCAGGTGGCCCACCAGA11.098901098901099No Hit
GTGAATGGTATACCTGAATCTGAATCCATGCTCTCCCATGCTAGCTTTGT11.098901098901099No Hit
CTGCTGGATGACGTGAGTAAACCTGAATCTTTGGAGTCCGCTGGATAGCC11.098901098901099No Hit
TTCCCTGTGATTATAAAAAAGGAAGCTAGCTGCTCTACGGTCATCATTGC11.098901098901099No Hit
AGATTGAAGAGTTCAAATCTGACCAAGATGTTGATGTTGGATAAGAGAAT11.098901098901099No Hit
CATATACAAGAAAAAATAAAAAAAAAAAACATAAAACAAAGAAAAAAAAA11.098901098901099No Hit
ACAACAAAAACATTAATAAAAAATTAATAAAATGACTAAATTTATAAATC11.098901098901099No Hit
CTAGAGGTCTGTGTGCCATTGCCCAGGCAGAGTCTCTGCGTTACAAACTC11.098901098901099No Hit
CAGGGATTTGTTCACTGGGTCTTTGTCTTTCTTGGCCGACTTTCCAGCGT11.098901098901099No Hit
AATTAAGACAACCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA11.098901098901099No Hit
AAATAGCACATAACTATGATAAGAAAAAATAATAAAAAAAAATAACTTAA11.098901098901099No Hit
ATATAAAACCAGCTAATAATACCAGGTTACCAGGAACCAGCTTTCAAATC11.098901098901099No Hit
ATGTTGAAACCTTCCGGCTTCCACAGAGTCCAGCCCTCACACTGCATGTG11.098901098901099No Hit
CCCCAGAACCTAACATCCTTCAAGAATTCCACCAAGTCCTGGGTGGGCTT11.098901098901099No Hit
AAAAAACCACATTACGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.098901098901099No Hit
GAATTTCCAAAAAGGAACTTTGAGGAAAGCCAAAACCTGTGATCACAGTG11.098901098901099No Hit
AGTTAAAACTTTCACATGGTCATGAATAAAAAAAAAAAGCATGATAAAAC11.098901098901099No Hit
CATAACGGGGTTCGGGTGTCTCGTGTGTGAAAATCACAGGGTTTGTCGAT11.098901098901099No Hit
GTCATCTAACAGAGCTTCAAAAACACCCACATCCATTCCTATCAATATCA11.098901098901099No Hit
GAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.098901098901099No Hit
GTACGGGGGGGTAAAAAAAAAAAAAAAAAAAAAATACCAACCCCGTGTCA11.098901098901099No Hit
CTGCCATAACATGTGCCCACACATCTTCACCTTGGAAATGTAGCATTTCA11.098901098901099No Hit
ATTAAAGAGTAATACATAGTCACACTTAAACTCATGTAAGCGTTCAAGGT11.098901098901099No Hit
AAGTACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAAATACA11.098901098901099No Hit
AATAAAAACATAATACAAAATGATTGACCATCATATGTTGCTTGTTGATT11.098901098901099No Hit
GAGTGCAAGAGATTGAAGAGTTCAAATCTGACCAAGATGTTGATCTGTCT11.098901098901099No Hit
CAGCTTCTCTGCCTTACTGGTTTTCTTGCTGTTGCTAAAGGCACAGCAGC11.098901098901099No Hit
GAAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGCAAGGACCTGTC11.098901098901099No Hit
AAACAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT11.098901098901099No Hit
ATTAACCATCAGCCATTGTAAAGTGTACAATTCAATGGTATTTAGTACAT11.098901098901099No Hit
GTGACAAAGTCACATGGTTCACACGGCAGGCATACTCATCTTTTTCAGTG11.098901098901099No Hit
AAAATACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTA11.098901098901099No Hit
GCTTTATCCCTGCTACGAGACCTCTCTCTCCTCCTATCTCTATCTCTACT11.098901098901099No Hit
AACTACGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAACAATAAA11.098901098901099No Hit
CTAGTCCTCATCGCCCTCCCATCCCTACGCAGCCTTTACATAACAGCCGA11.098901098901099No Hit
AATAAAGTGAAAAAAAAAAAAAAAAAAAAAAAAAATACATTCAACAAATA11.098901098901099No Hit
CACATGATCCACCCACCTCAGCCTCCTAAAGTGCTGGGATTACAGGCGTG11.098901098901099No Hit
GTATCAACGCAGAGTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG11.098901098901099No Hit
CACCCTTCTGTTTTGGGGTTTCAGGATGCCCATCACTCTTTTGTTTTGGA11.098901098901099No Hit
GTTAAGGACCTGGTGGTGCTGCTGTTTGAAACCGCCCTGCTATCTTCTGG11.098901098901099No Hit
AAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGTTGTGGTCT11.098901098901099No Hit
CTCTGGGGAGATGCCTTGGAAATCCGCTTTGTTCTGTGGGTTGATCTGTA11.098901098901099No Hit
ATATCAACTAACATAATAGAATAATAATAAAAATATTTTTTATTTTTTAA11.098901098901099No Hit
ATCAAGAAGGAAGATCTGGAGCTAATAATGACTGAGATGGAGATATCTCG11.098901098901099No Hit
ATACGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGACACGGGT11.098901098901099No Hit
ATTCAGGATAGGTAGGGTTTTAAAGGGAGATAAACACAGTCTCATCAACT11.098901098901099No Hit
TGAGTGCACTATCTATGCCAAACTCAGCAAGTCTATAACTTACTGTTTAA11.098901098901099No Hit
ATATCAACGCAGAGTACGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.098901098901099No Hit
GTATTCGATAGATATCTAAAAATACAGAACAGGAAAAAAAATTAATTAAG11.098901098901099No Hit
GCCTGAGGCTGTTTTAGAGTTAACTTAAAAATATATATATAAGTCTGGGT11.098901098901099No Hit
AGACAGACTTCGCGGCGAGCAGTTTTAAAAAAACTCAGACGGCCGGCACC11.098901098901099No Hit
GCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAACT11.098901098901099No Hit
GTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCACAAAGTAAAAA11.098901098901099No Hit
CGCCTGTAGTCCTAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAA11.098901098901099No Hit
GGCTAGAGGCTGAGCACCTTTGGAAACACCATTTAAGGGAATGTGAGCAC11.098901098901099No Hit
CTTCAGTAGAAAGAATAACATATGCAAATGTTAATGGACCCAAACAACTA11.098901098901099No Hit
CCCTGCGATTTGAACATTATCACATTTGAATTCAGAAAAACTATTCTCTC11.098901098901099No Hit
GTATCAACGCAGAGTACGCGAAGTACCCGAAAAAAAAAAAAAAAAAAAAA11.098901098901099No Hit
GTTTGTACTCATCAACCACACCCACGTACCCCCGACTCTTCTCCTACTCT11.098901098901099No Hit
GACAAAACCCGTCTCAACTAAAAATAAAAAAATTTGACGTGCGTGGTGGC11.098901098901099No Hit
ATTATAAGACACACAATTAAACTATATTTTTAATTTATAATATAATATTG11.098901098901099No Hit
CGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGCCGGGGGGGTGG11.098901098901099No Hit

[FAIL]Adapter Content

Adapter graph