EGAF00005412491 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412491
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1719200
Sequences flagged as poor quality	0
Sequence length	61
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5044	0.293392275476966	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAA	2828	0.16449511400651465	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAAC	2570	0.1494881340158213	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGA	2491	0.14489297347603539	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCA	2372	0.13797114937180083	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2265	0.13174732433690087	No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTT	1913	0.11127268496975337	No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGATGCCTTATGTGA	1855	0.10789902280130294	No Hit
GAGTAGGGATGAGCATAAACCAACAACTCTCAAAGAAGATGGGAAGCTATACTATATAGGT	1787	0.10394369474174034	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGACG	130	0.0	40.189373	22
GTGGTAT	3960	0.0	39.12396	1
ATTCGAC	135	0.0	38.702003	21
TGGTATC	4035	0.0	38.101765	2
ATCGGTT	30	0.0019252035	36.669323	39
CGACGAG	225	0.0	36.66399	24
TATATCG	75	1.9826984E-10	36.660793	5
GATATAG	50	1.8120227E-5	33.022564	1
GGTAGTA	35	0.004099325	31.429934	53
GTGTCGT	185	0.0	31.213936	33
AGTCCCG	170	0.0	30.737522	54
GTGCGCA	45	3.7953578E-4	30.556879	9
TCGTCTA	240	0.0	29.793825	54
CCGTTCT	75	2.9462353E-7	29.333752	46
CGACCCT	130	3.6379788E-12	27.501192	10
AGTACGT	40	0.007872536	27.501192	13
TCGACGA	190	0.0	27.497993	23
CGCGACC	70	5.7123325E-6	27.497992	33
GCTCGTC	275	0.0	27.001957	39
ATCGTCA	300	0.0	26.584486	10