FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005412511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005412511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209785
Sequences flagged as poor quality0
Sequence length61
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10230.4876421097790595No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTCAA150.00577654455.00119446
GTGGTAT1750.045.6050571
AATATAC257.840903E-444.00095426
GAGTAGT401.8880551E-434.4003641
TGGTATC2550.032.353642
GTCTACA400.00785786727.5005992
GTATCAA7600.025.3476351
TACATCT550.001224758924.994584
TATCAAC8650.021.9368932
AGAGTAC4900.021.8830111
GGTATCA3950.021.5982021
ATCAACG8800.021.2453923
GTATTTC650.003235098221.1492616
CAACGCA9100.020.2428635
TCAACGC9150.020.1322464
AACGCAG9500.019.6799436
TTGGATA700.004962106219.64328427
GATAAGA700.004962106219.64328430
TGGATAA700.004962106219.64328428
TATCCTG700.004968959419.6385975
Produced by FastQC (version 0.11.5)