FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005412526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005412526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1843
Sequences flagged as poor quality0
Sequence length91
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT70.3798155181768855No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.3798155181768855No Hit
GTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.2170374389582203No Hit
CCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCACG30.16277807921866522No Hit
GGATAGCCTCCAGGCCAGAAAGAGAGAGTAGCGCGAGCACAGCTAAGGCC30.16277807921866522No Hit
ATATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.16277807921866522No Hit
ACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.16277807921866522No Hit
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.16277807921866522No Hit
ATATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.16277807921866522No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.16277807921866522No Hit
GATTGTGACAGACCATTCCCATCGGCCAAGTGGTCGAACCCCTGTCTCTT20.10851871947911015No Hit
CCTCTAGCCTGGCTGGCAGCCCCCAGCCAGACGTGTGGTTCAGGCCAGAA20.10851871947911015No Hit
GTCAGCTGATCAGCCATGGTGCGAGCGAAGGGAGGAAGAGCAGAGGGAGC20.10851871947911015No Hit
CCTACTAACAGAACGGGACTTGCTCCGGCTCCGGCTCCTGCTCCTGCTTC20.10851871947911015No Hit
GCACCACACCACGCTCGCTTGGCAGTAACGCGAGCAGGGGGCGTCCCTAT20.10851871947911015No Hit
GGCCTGCAGGGGACAGCATAGGCCCAAAGCTAGAGGAAGCTTGGAAGGGC20.10851871947911015No Hit
AGACAGGTTCTTTCCTTCCCTGCCAGCCAGATAGATAGACAGATGGGAAA20.10851871947911015No Hit
CAGCTGGTACCCCAGCTCCTCCAGGACCTGCCACTATGATGCCTGTCTCT20.10851871947911015No Hit
TATCAACGCAGAGTACGGGCACGTATAAGACGAGCAAAAAAAAAAAAAAA20.10851871947911015No Hit
AGGCTGGTCTCCAACTCCTGATCTCAGGTGATCTGCCCCTGTCTCTTATA20.10851871947911015No Hit
GAGAAGAACTCGGCCACGATTTCGGCGCTCCCGCGCAGGGTGATTCCCTG20.10851871947911015No Hit
CCTCATTACGATTCGCCTGCTTGCTTCTCCTGTTCAATCGTTTCTTTGGA20.10851871947911015No Hit
GGGAAAGGCAGGCGCGGCCTTCGTTGTCAGTAGTTCTTTGATGTGAAAGG20.10851871947911015No Hit
GAGGACGCGGGCCTGGTGGCCGAGGCCGAGGCCGTGGCTGCCGGCTGGAT20.10851871947911015No Hit
GCAAAGCGAGGCGCACGAGTACGAGCGAAGTCTGGTCTGCGCAGTGGCCA20.10851871947911015No Hit
GGGGAGGAGCATTTAGCCCACCGAACCCGTACTCTGCGTTGATACCCTGT20.10851871947911015No Hit
GTATCAACGCAGAGTACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.10851871947911015No Hit
CAATTGCCCAGTGCTCAGTCAAAGCCCAAGGTGGAAGACAAGTGCTTCCC20.10851871947911015No Hit
CTCCAGTCCTCCCCGGTGCTGGGACCGTGGCCATCTCTCCAGGGCCTGTC20.10851871947911015No Hit
GGTGGCCGAGCCACGGAATGGTGTCCTTCCCAAGGGCTGCAGGCTTTGTC20.10851871947911015No Hit
GAATAGAATGGAATGGAACGAATTGTAATGGAATGGAATTGAATGGAATG20.10851871947911015No Hit
CTCTCGGACTGGCGGATTTTCAGGATCTCAGTGTAGCTCAGGTTCTGCAG20.10851871947911015No Hit
GCGCCGTCAGGTCCCCTTCCACCTGCACATCAACCTGGAGCTGCTGGAGT20.10851871947911015No Hit
ACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.10851871947911015No Hit
GGAATTCCCACTCCCCTCCCCGCACATTGTCCCACCTGTCTCTTATACAC20.10851871947911015No Hit
TTGCAGGTGGTGACATTGCCCAAGGCTGAGAGCCGCTCCTCCACCCGCCT20.10851871947911015No Hit
CTCCTAGACCGCGACGACAGCCGGCTGGACCCGCCCGACCGCGAGGTCGA20.10851871947911015No Hit
GTATCAACGCAGAGTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.10851871947911015No Hit
GGTTCCTGCAAGTGCAAAGAGTGCAAATGCACCTCCTGCAAGAAGAGCTG20.10851871947911015No Hit
AAACTGAAGAAGACAGAGACGCAAGAGAAAAATCCACTGCCTTCCAAAGA20.10851871947911015No Hit
CTTTAATCCTCTCACTCCACAAATTCATAAGCCTGTCTCTTATACACATC20.10851871947911015No Hit
GTATCAACGCAGAGTACGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.10851871947911015No Hit
AGTAAACTGCGCCTTCTGCTGCTCGGCGGCCACCAGGCGCTGCAACTCCT20.10851871947911015No Hit
CTTGTCATATCGCGCACGTAGTAGCCTAGAGCGCCAGGGGCGGAAATTCG20.10851871947911015No Hit
ACCATGTCTGACAAACCCGATATGGCTGAGATCGAGAAATTCGATAAGTC20.10851871947911015No Hit
GGCACCGTGTGGGTGACCCCGTCTCCAGAGTCCATGACAATGCCAGTGGT20.10851871947911015No Hit
GTCTTATACGTGCCAAGCAGGTATAACCCCCGTACTCTGCGTTGATACTG20.10851871947911015No Hit
CCTGAAAAGTTTTGCCGGCGCACAAGCACGATCGGCTCCTAATAGGAGGT20.10851871947911015No Hit
CCAGGGGAGTGGGTGAGATGCAGGGAGACGGGGATCAAAGCTCTGAGGAG20.10851871947911015No Hit
GTGGTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA20.10851871947911015No Hit
GTCACGTAAGCCCCCTGCTCCCAGCCCTCATGCCGCTCCTCAGAGCTTTG20.10851871947911015No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)