FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005412527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005412527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1843
Sequences flagged as poor quality0
Sequence length61
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG170.9224091155724362No Hit
TGCCATGGCTGATCTAACAGGAAACTGAGCTCAGGCAGTAATGCTTGGCACCGCCCCCCAC20.10851871947911015No Hit
GAGTTGCAGCGCCTGGTGGCCGCCGAGCAGCAGAAGGCGCAGTTTACTCTGTCTCTTATAC20.10851871947911015No Hit
GCGGGGGGCACTGTGCGGCGCAGCGCTGTGACGGTCGCCATGGCAATCTCCTCATGAGAAA20.10851871947911015No Hit
GTGGTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.10851871947911015No Hit
GAGTACGGGGGGCAGGACCTCCTTTCTGGCTGGAGCTCAGGGAGCCCTGTGCCCACAGGTG20.10851871947911015No Hit
GGTAGACACACTCCAGCAGCTCCAGGTTGATGTGCAGGTGGAAGGGGACCTGACGGCGCCT20.10851871947911015No Hit
GTGCAAAGAGTGCAAATGCACCTCCTGCAAGAAGAGCTGCTGCTCCTGCTGCCCCGTGGGC20.10851871947911015No Hit
GACAGGATCATGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTTCCGCCCCTGGCGCTCT20.10851871947911015No Hit
GCCCTGGAGAGATGGCCACGGTCCCAGCACCGGGGAGGACTGGAGCTGTCTCTTATACACA20.10851871947911015No Hit
CCGGTGACGGGGTCACCCACACTGTGCCCATCTACGAGGGGTATGCCCTCCCCCATGCCAT20.10851871947911015No Hit
CCCCAGACACCCAGTATGAGTTTCAGGTGCGGGTCAAGCCTCTGCAAGGCGAGTTCACGAC20.10851871947911015No Hit
GTGGGACAATGTGCGGGGAGGGGAGTGGGAATTCCCTGTCTCTTATACACATCTGACGCTG20.10851871947911015No Hit
GTTTCGACTTATCGAATTTCTCGATCTCAGCCATATCGGGTTTGTCAGACATGGTCTGTCT20.10851871947911015No Hit
GTTGCGGGTCCTGCGGAAGTCCTCGGAGCGGCCGTCGCGGAAAGCTCGGCAAAGAGAGAGG20.10851871947911015No Hit
GCATCATAGTGGCAGGTCCTGGAGGAGCTGGGGTACCAGCTGCTGTCTCTTATACACATCT20.10851871947911015No Hit
GCTTATGAATTTGTGGAGTGAGAGGATTAAAGCTGTCTCTTATACACATCTGACGCTGCCG20.10851871947911015No Hit
GACGATGCCAGTGCCCCTGGGTGCAGGGATGAGGCGTACCAGCACAGAGCCGCAGCGGCCT20.10851871947911015No Hit
GCCTTTCTCTCAGTCGTGAGGGAGGCGTCGACGGCGTGCGGAAGTCCTGAGTTGAGGCTTG20.10851871947911015No Hit
GTCGCAGCCCCCGCGCTGGTGCAGCCACCCTCGCTCCCTCTGCTCTTCCTCCCTTCGCTCG20.10851871947911015No Hit
GAGTGGAAGCGCGTGCTTTTGTTTGTGTCCCTGGCCATGGCGCTGCAGCTCTCCCGGGAGC20.10851871947911015No Hit
TATCAACGCAGAGTACGGGGGTTATACCTGCTTGGCACGTATAAGACCTGTCTCTTATACA20.10851871947911015No Hit
AAAAAAAAGTCGACTCTGCGTTGATACCTGTCTCTTATACACATCTGACGCTGCCGACGAT20.10851871947911015No Hit
GACCAGGAGCTGCAACACATTCGCAACAGCCTCCCAGACACAGTGCAGATTAGGCGGGTGG20.10851871947911015No Hit
GTATCAACGCAGAGTACGGGCTGTCTCTTATACACATCTGACGCTGCCGACGATCTTACGC20.10851871947911015No Hit
AGGCAGGACAGCACAGGGTACGGAGCAGTCTGCAGAGAGGCCAGCTCATCAGGGAAGCACT20.10851871947911015No Hit
GTATCAACGCAGAGTACGGGTGGCAGCAGGCGCAGCCCAGCCTCGAAATGCAGAACGACGC20.10851871947911015No Hit
GGGTTCGACCACTTGGCCGATGGGAATGGTCTGTCACAATCCTGTCTCTTATACACATCTG20.10851871947911015No Hit
ATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCTGTCTC20.10851871947911015No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)