EGAF00005412616 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005412616
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	215524
Sequences flagged as poor quality	0
Sequence length	91
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	622	0.28859894953694254	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	433	0.20090569959726065	No Hit
ATATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	354	0.16425084909337243	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTCATGAATCTCGTATGCCGT	315	0.14615541656613648	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	314	0.14569143111672017	No Hit
CCTCATTACGATTCGCCTGCTTGCTTCTCCTGTTCAATCGTTTCTTTGGA	253	0.11738831870232548	No Hit
GGAATGTACAGTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGC	251	0.11646034780349289	No Hit
GACCAGACTTCGCTCGTACTCGTGCGCCTCGCTTTGCTTTTCCTCCGCAA	247	0.11460440600582766	No Hit
GTATCAACGCAGAGTACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	216	0.10022085707392216	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGGG	20	3.0238309E-5	84.99513	1
AGCGTCA	50	1.7462298E-10	67.9961	3
TCCTAGC	20	0.0032206594	63.74635	1
GCGTCAG	60	8.785719E-10	56.66342	4
GTGGTAT	250	0.0	50.997078	1
TAGGGTG	25	0.0077894763	50.997074	7
GTATCAA	1190	0.0	46.425907	1
GCAGCGT	75	6.346454E-9	45.330738	1
TGGTATC	285	0.0	43.243134	2
CGTCAGA	80	1.1224984E-8	42.497566	5
TATCAAC	1585	0.0	40.218517	2
AGTATCA	100	1.879016E-9	38.247807	1
TTCGGGC	35	9.2384325E-6	36.426483	40-41
CAACGCA	1745	0.0	36.28732	5
ATCAACG	1785	0.0	35.712234	3
TCAACGC	1810	0.0	35.218975	4
AACGCAG	1795	0.0	35.039772	6
TACACTC	50	0.0027847684	33.99805	5
GTCGAGG	270	0.0	33.05366	8
AAGTACG	130	6.730261E-10	32.690434	1