FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005412788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005412788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25543
Sequences flagged as poor quality0
Sequence length91
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCCTT150.001017975685.000016
CAAATCC150.001017975685.000014
ATCCTTG150.001017975685.000017
TCCTTGA200.003187441763.758
AAATCCT200.003187441763.755
CCTTGAT200.003187441763.759
ATCAAAT200.003187441763.752
GTGTTTG250.007709632651.01
TCAAATC250.007709632651.03
GTATCAA551.6958275E-646.363641
TATCAAC655.350974E-639.230772
ATCAACG708.898669E-636.428573
TCAACGC751.4278001E-534.04
CAACGCA751.4278001E-534.05
AACGCAG802.2205924E-531.8756
CGCAGAG853.360257E-530.08
ACGCAGA904.9629427E-528.3333367
TACGGGG300.00674568228.33333614-15
GCAGAGT1051.4163676E-424.2857159
GCCGTCT1002.4629117E-923.37584-85
Produced by FastQC (version 0.11.5)