FastQCFastQC Report
Thu 23 May 2024
EGAF00005412875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005412875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences185732867
Total Bases16.9 Gbp
Sequences flagged as poor quality0
Sequence length91
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA3012070.16217215879190622Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2789940.1502125092377969No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAACTGAAGAGTTTGATCAT1931790.10400905511246966Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AAGCAGTGGTATCAACGCAGAGTACATGGGCACAGGAAGGGGAACATCAC1872760.10083083464166845Clontech SMARTer II A Oligonucleotide (100% over 25bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)