FastQCFastQC Report
Thu 16 May 2024
EGAF00005413169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005413169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85548355
Total Bases7.7 Gbp
Sequences flagged as poor quality0
Sequence length91
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGATAAACTTCGCCTTAATTTT2639830.30857752904775315Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1156680.1352077430360876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)