FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005413416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005413416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1597784
Sequences flagged as poor quality0
Sequence length91
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA51600.044.0873071
TGGTATC11450.041.9448362
TATCAAC57650.039.220932
TCAACGC58500.038.718864
CAACGCA59800.037.9482085
ATCAACG60650.037.3463023
GTGGTAT13150.037.1861841
AACGCAG62550.036.619526
GGTATCA26400.034.9514581
CGCAGAG65050.034.949758
ACGCAGA65850.034.718757
GCAGAGT70400.032.294789
CAGAGTA59750.024.50205410-11
CGGGCTA552.018624E-423.1790816-17
AGAGTAC57450.022.0433410-11
GAGTACG66100.022.01964612-13
GTACGGG71350.020.28029614-15
GTATAGA4650.020.117741
AGTACGG63550.019.82715212-13
TACGGGG25150.018.75582714-15
Produced by FastQC (version 0.11.5)