FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005413483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005413483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences723859
Sequences flagged as poor quality0
Sequence length61
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11740.1621862821350567No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGATTA401.8998826E-434.3779836
TGGTATC3600.032.8364522
GTATCAA21200.029.1949061
GTGGTAT4350.028.4566441
GGTATCA9500.028.0872061
TATCAAC24400.025.5756282
TCAACGC24150.025.379794
ATCAACG24500.025.0206763
CGCGGGA550.001226977824.99698425
CAACGCA24900.024.8378185
AGAGTAC24150.024.1412111
AACGCAG25600.023.9472246
CAGAGTA25200.023.46271510
CGCAGAG25950.023.412368
ACGCAGA26150.023.3384257
GCAGAGT27900.022.079249
GTATTAG1801.0913936E-1121.3951821
CGCTAGG650.00323697721.1556845
GAACGCG650.003238274721.15421722
AGTACGG27700.020.84874313
Produced by FastQC (version 0.11.5)