FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005413521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005413521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1604
Sequences flagged as poor quality0
Sequence length61
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG90.5610972568578554No Hit
TGTCAGACATGGTTGCGGAGGAAAAGCGAAGCGAGGCGCACGAGTACGAGCGAAGTCTGGT30.18703241895261846No Hit
CCAGCATTTTGGGAGGCCAAGGTGGGAAGATTGCCCAAGGCCAGGAGCTTGAGACAGTCTG20.12468827930174563No Hit
CATCCAATCCAAATGCGGCATCTTCAAACCTCCATGATGCCTGTCTCTTATACACATCTGA20.12468827930174563No Hit
CTCATTCCCTGTGTCGATCCCGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTGAC20.12468827930174563No Hit
CCTAGAAGGTTGCCTGGCTGGCCCAGCTCGGCTCCTGTCTCTTATACACATCTGACGCTGC20.12468827930174563No Hit
GTATCAACGCAGAGTACGGGGATCAGACCCTTTTGCAACGTCAGCCTGTCTCTTATACACA20.12468827930174563No Hit
GGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGCCTCGCTTCGCTTTTCCTCC20.12468827930174563No Hit
GCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGCTGTCTCT20.12468827930174563No Hit
CCCCCAAGACGCATATGACTCACCACGCTGTCTCTGACCTGTCTCTTATACACATCTGACG20.12468827930174563No Hit
CAGCTAAGGCCACGGAGCGAGACATCTCGGCCCGAATGCTGTCAGCTTCCTGTCTCTTATA20.12468827930174563No Hit
GTCCTACGGAGCCCCACGGGGGGACAAGGAGGAGCTGACACCCTGTCTCTTATACACATCT20.12468827930174563No Hit
GGGTCAGCAGAGAAGCGAAGTTGGGACCGGAGGCCAGGGAGATGGGTGGGACCCCGTACTC20.12468827930174563No Hit
GTGCAGATTCAGACCGTGCTCTCCATTCCACTGTGAGAGGGCTTGTCACGCTTGCTGTCTC20.12468827930174563No Hit
GTGATACCACAGCACCGACCTTTGTCAGCGCGACAGTGGATCTATCAGGGACTACATCTGT20.12468827930174563No Hit
CATCAAATCCTTGATGATTGCTCCATCGACTTCCTGTCTCTTATACACATCTGACGCTGCC20.12468827930174563No Hit
TCGATCGCCAGAGCAATTCCAGTAAACCGGGTCTAGCCTTCACCTGTCTCTTATACACATC20.12468827930174563No Hit
GGGCCTTGGTTTGATCCTTGGCCTTGGCCTTGGCCTTGGCCTTTGGCCGGCACAGCCTGAG20.12468827930174563No Hit
TGCCATCCCTGTGTGACAGCAATGAGGTGAACCCAGGGGCCGAAGCCCACCCAGGGAGCTG20.12468827930174563No Hit
AGACAGGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTACAGCCTGGGTCCAAGC20.12468827930174563No Hit
ACAGCTCCTGCCTTGGCCTCTCGAGTAGCTGGGATTACAGCTGTCTCTTATACACATCTGA20.12468827930174563No Hit
GCCTCGAAGGAAGCACAAACCCTCCATCCACTTCCCATTTCCTCTGCCCTTTTCCTGTCTC20.12468827930174563No Hit
GCTGACAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCCTGTCTCTTA20.12468827930174563No Hit
GACCAGAGCTCAGATGCTACCCCTGGCCCGGCATCATCTCTTACTGCGCTGCTCCTCATCT20.12468827930174563No Hit
CCCTCCTAGAGCTACCTGTGGAGCAACCTGCTCAGATACATCAAACATGGAGACAGCACCT20.12468827930174563No Hit
AGACTCATGAGGACTGTGTGATCTGCACAAGCCCTGTCTCTTATACACATCTGACGCTGCC20.12468827930174563No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)