FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005413535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005413535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences273559
Sequences flagged as poor quality0
Sequence length61
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTATAA303.4685363E-545.8682631
ACTAGAG300.001924505736.6610573
TGCCGAC1100.035.01385555
TGGTATC1500.034.8280032
ATATAAA350.00407897731.4525221
GCCGCTT350.00409728831.4237638
GTGACCG350.00409728831.42376329
GTATCAA9150.029.7767751
GTGGTAT2200.028.771911
GTCTAGG506.9869304E-427.5209581
TGACCGG400.00786868827.49579630
GCCTATT400.00786868827.4957967
TCTAGGG507.024407E-427.4957922
GGTATCA4200.026.2104381
TCAACGC10300.026.1514844
CAACGCA10550.025.7923055
AACGCAG10450.025.7855286
CTGCCGA2150.025.59152455
ACGCAGA10550.025.5411177
ATCAACG10550.025.5411173
Produced by FastQC (version 0.11.5)