EGAF00005413780 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005413780
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	749456
Sequences flagged as poor quality	0
Sequence length	91
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2161	0.28834247774385685	No Hit
GTGGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2155	0.2875418970559979	No Hit
GGTATCAACGCAGAGTCGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1329	0.17732862236075234	No Hit
GTGGTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTT	1109	0.14797399713925835	No Hit
GTACGGGACTATCACCCTCTACGGTAGCACTTCCCAGAGCTTTCCGCTAA	932	0.12435686684742	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	899	0.1199536730641959	No Hit
GTATCAACGCAGAGTCGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	852	0.11368245767596763	No Hit
ACGTAATAGCCTGCGATAAGCTTCGGGGAGGCGGCAAATATCCTGTGATC	799	0.10661066159988045	No Hit
TCCCAGAGCTTTCCGCTAAAACACATATAACTTAATGGGCTGATCCCCGT	778	0.1038086291923742	No Hit
GTAATTAAGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGA	777	0.10367519907773105	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGTATC	1730	0.0	39.059437	2
GTGGTAT	1820	0.0	37.61	1
GTATCAA	5875	0.0	36.6901	1
AACGCAG	6535	0.0	32.971394	6
GTCGAGG	705	0.0	31.949327	8
TATCAAC	6870	0.0	31.85851	2
TCAACGC	6950	0.0	31.124897	4
ATCAACG	7075	0.0	30.635057	3
CAACGCA	7070	0.0	30.59661	5
ACGCAGA	7270	0.0	29.637976	7
CGCAGAG	7290	0.0	29.556662	8
ACAGGTA	410	0.0	29.035078	1
GGTATCA	3425	0.0	28.923058	1
GCTTGTA	470	0.0	28.042236	1
GCAGAGT	7825	0.0	27.483377	9
GACAGGT	250	0.0	27.210016	1
AGACAGG	260	0.0	26.163479	1
GCTTGCC	85	0.0012235272	25.009207	1
TTGTACG	175	1.6194463E-8	24.284933	3
CAGAGTA	4690	0.0	23.606892	10-11